PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g21720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 343aa    MW: 37067.9 Da    PI: 8.7509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g21720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-0597119223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  Cp Cg++F+  ++L++H+ + H
  CA04g21720  97 ACPECGEVFPKIESLEHHQAVkH 119
                 6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028096119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.99596124IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-20121338No hitNo description
Gene3DG3DSA:3.90.228.102.5E-8121338IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MHRDVVHGNT RVVHRADNSP ESSSLGQETR LLSKNKTSHH GPSSSSSRSL AKSNGGGSST  60
YTTSSRGMQF RKLSGCYECH MIVDPSRYPL PRSTICACPE CGEVFPKIES LEHHQAVKHA  120
VSELGPEDSS RNIVEIIFKS SWLKKDNPIC KIERILKVYN TKRTIQRFED CRDAVKIHAV  180
ATGKKNPRCA ADGNELLRFY CTSLTCSLGA RGSSSLCGSV PGCGVCTTIR HGFQGNKISG  240
VRTTASSGRA HDCLGSGTAR RRAMIVCRVI AGRVKQTKDV VTSPTMEEEN CSTSDSGSGS  300
GSTAYDSVAG YAGIYSNLEE LYVFNPRAIL PCFVVIYEAL ES*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097400.0FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence.
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568396.10.0PREDICTED: uncharacterized protein LOC107866896
TrEMBLA0A0V0I9M90.0A0A0V0I9M9_SOLCH; Putative C2H2-like zinc finger protein-like
STRINGSolyc04g081370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-141C2H2-like zinc finger protein